Package: DEHOGT 0.99.0
DEHOGT: Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data
Implements a generalized linear model approach for detecting differentially expressed genes across treatment groups in count data. The package supports both quasi-Poisson and negative binomial models to handle overdispersion, ensuring robust identification of differential expression. It allows for the inclusion of treatment effects and gene-wise covariates, as well as normalization factors for accurate scaling across samples. Additionally, it incorporates statistical significance testing with options for p-value adjustment and log2 fold range thresholds, making it suitable for RNA-seq analysis.
Authors:
DEHOGT_0.99.0.tar.gz
DEHOGT_0.99.0.zip(r-4.7)DEHOGT_0.99.0.zip(r-4.6)DEHOGT_0.99.0.zip(r-4.5)
DEHOGT_0.99.0.tgz(r-4.6-any)DEHOGT_0.99.0.tgz(r-4.5-any)
DEHOGT_0.99.0.tar.gz(r-4.7-any)DEHOGT_0.99.0.tar.gz(r-4.6-any)
DEHOGT_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DEHOGT/json (API)
NEWS
| # Install 'DEHOGT' in R: |
| install.packages('DEHOGT', repos = c('https://ahshen26.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ahshen26/dehogt/issues
geneexpressiondifferentialexpressionstatisticalmethodregressionnormalization
Last updated from:ad614f6a1c. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 96 | ||
| source / vignettes | OK | 160 | ||
| linux-release-x86_64 | NOTE | 109 | ||
| macos-release-arm64 | NOTE | 122 | ||
| macos-oldrel-arm64 | NOTE | 145 | ||
| windows-devel | NOTE | 71 | ||
| windows-release | NOTE | 73 | ||
| windows-oldrel | NOTE | 89 | ||
| wasm-release | OK | 96 |
Exports:dehogt_func
Dependencies:codetoolsdoParallelforeachiteratorsMASS
