Package: DEHOGT 0.99.0

DEHOGT: Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data

Implements a generalized linear model approach for detecting differentially expressed genes across treatment groups in count data. The package supports both quasi-Poisson and negative binomial models to handle overdispersion, ensuring robust identification of differential expression. It allows for the inclusion of treatment effects and gene-wise covariates, as well as normalization factors for accurate scaling across samples. Additionally, it incorporates statistical significance testing with options for p-value adjustment and log2 fold range thresholds, making it suitable for RNA-seq analysis.

Authors:Qi Xu [aut], Arlina Shen [cre], Yubai Yuan [ctb], Annie Qu [ctb]

DEHOGT_0.99.0.tar.gz
DEHOGT_0.99.0.zip(r-4.7)DEHOGT_0.99.0.zip(r-4.6)DEHOGT_0.99.0.zip(r-4.5)
DEHOGT_0.99.0.tgz(r-4.6-any)DEHOGT_0.99.0.tgz(r-4.5-any)
DEHOGT_0.99.0.tar.gz(r-4.7-any)DEHOGT_0.99.0.tar.gz(r-4.6-any)
DEHOGT_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
DEHOGT/json (API)
NEWS

# Install 'DEHOGT' in R:
install.packages('DEHOGT', repos = c('https://ahshen26.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ahshen26/dehogt/issues

On CRAN:

Conda:

geneexpressiondifferentialexpressionstatisticalmethodregressionnormalization

3.00 score 2 scripts 152 downloads 1 exports 5 dependencies

Last updated from:ad614f6a1c. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE96
source / vignettesOK160
linux-release-x86_64NOTE109
macos-release-arm64NOTE122
macos-oldrel-arm64NOTE145
windows-develNOTE71
windows-releaseNOTE73
windows-oldrelNOTE89
wasm-releaseOK96

Exports:dehogt_func

Dependencies:codetoolsdoParallelforeachiteratorsMASS

Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data

Rendered fromDEHOGT.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2024-09-06
Started: 2024-09-06