DEHOGT - Differentially Expressed Heterogeneous Overdispersion Gene Test for Count Data
Implements a generalized linear model approach for detecting differentially expressed genes across treatment groups in count data. The package supports both quasi-Poisson and negative binomial models to handle overdispersion, ensuring robust identification of differential expression. It allows for the inclusion of treatment effects and gene-wise covariates, as well as normalization factors for accurate scaling across samples. Additionally, it incorporates statistical significance testing with options for p-value adjustment and log2 fold range thresholds, making it suitable for RNA-seq analysis.
Last updated 6 months ago
geneexpressiondifferentialexpressionstatisticalmethodregressionnormalization
3.30 score 2 scripts 156 downloads